IL_8RXH_074
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- CGUCAAAA*UUAGUGAUUG
- Length
- 18 nucleotides
- Bulged bases
- 8RXH|1|L1|G|1390, 8RXH|1|L1|U|1395
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_074 not in the Motif Atlas
- Homologous match to IL_8C3A_052
- Geometric discrepancy: 0.35
- The information below is about IL_8C3A_052
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
8RXH|1|L1|C|1230
8RXH|1|L1|G|1231
8RXH|1|L1|U|1232
8RXH|1|L1|C|1233
8RXH|1|L1|A|1234
8RXH|1|L1|A|1235
8RXH|1|L1|A|1236
8RXH|1|L1|A|1237
*
8RXH|1|L1|U|1387
8RXH|1|L1|U|1388
8RXH|1|L1|A|1389
8RXH|1|L1|G|1390
8RXH|1|L1|U|1391
8RXH|1|L1|G|1392
8RXH|1|L1|A|1393
8RXH|1|L1|U|1394
8RXH|1|L1|U|1395
8RXH|1|L1|G|1396
Current chains
- Chain L1
- LSUa_rRNA_chain_1
Nearby chains
- Chain L2
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Putative 60S ribosomal protein L13a
- Chain LK
- Putative 40S ribosomal protein L14
- Chain LR
- 60S ribosomal protein L18a
- Chain Lc
- Putative 60S ribosomal protein L7
- Chain Lg
- Putative ribosomal protein l35a
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