IL_8RXH_077
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- CUCAUUCUCG*CUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 8RXH|1|L1|U|1250, 8RXH|1|L1|U|1251, 8RXH|1|L1|C|1252, 8RXH|1|L1|U|1253, 8RXH|1|L1|U|1378, 8RXH|1|L1|A|1380
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_077 not in the Motif Atlas
- Homologous match to IL_8C3A_054
- Geometric discrepancy: 0.1602
- The information below is about IL_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8RXH|1|L1|C|1246
8RXH|1|L1|U|1247
8RXH|1|L1|C|1248
8RXH|1|L1|A|1249
8RXH|1|L1|U|1250
8RXH|1|L1|U|1251
8RXH|1|L1|C|1252
8RXH|1|L1|U|1253
8RXH|1|L1|C|1254
8RXH|1|L1|G|1255
*
8RXH|1|L1|C|1376
8RXH|1|L1|U|1377
8RXH|1|L1|U|1378
8RXH|1|L1|A|1379
8RXH|1|L1|A|1380
8RXH|1|L1|G|1381
Current chains
- Chain L1
- LSUa_rRNA_chain_1
Nearby chains
- Chain L2
- Large subunit ribosomal RNA; LSU rRNA
- Chain L4
- Large subunit ribosomal RNA; LSU rRNA
- Chain L6
- SR6_chain_6
- Chain LE
- Putative 60S ribosomal protein L9
- Chain LH
- Putative 60S ribosomal protein L13a
- Chain LK
- Putative 40S ribosomal protein L14
- Chain LR
- 60S ribosomal protein L18a
- Chain Lm
- Ubiquitin-60S ribosomal protein L40
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