IL_8RXH_092
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- CUGAG*CAACAG
- Length
- 11 nucleotides
- Bulged bases
- 8RXH|1|L1|C|1738, 8RXH|1|L1|A|1739
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_092 not in the Motif Atlas
- Homologous match to IL_5TBW_063
- Geometric discrepancy: 0.1351
- The information below is about IL_5TBW_063
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
8RXH|1|L1|C|1638
8RXH|1|L1|U|1639
8RXH|1|L1|G|1640
8RXH|1|L1|A|1641
8RXH|1|L1|G|1642
*
8RXH|1|L1|C|1735
8RXH|1|L1|A|1736
8RXH|1|L1|A|1737
8RXH|1|L1|C|1738
8RXH|1|L1|A|1739
8RXH|1|L1|G|1740
Current chains
- Chain L1
- LSUa_rRNA_chain_1
Nearby chains
- Chain L2
- Large subunit ribosomal RNA; LSU rRNA
- Chain L3
- SR1_chain_3
- Chain L7
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- Putative 60S ribosomal protein L2
- Chain Lh
- Putative 60S ribosomal protein L34
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- Putative 60S ribosomal protein L39
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