IL_8RXH_114

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

8RXH|1|L2|A|488, 8RXH|1|L2|A|489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_114 not in the Motif Atlas

Homologous match to IL_5TBW_085

Geometric discrepancy: 0.1156

The information below is about IL_5TBW_085

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8RXH|1|L2|U|446
8RXH|1|L2|G|447
*
8RXH|1|L2|U|487
8RXH|1|L2|A|488
8RXH|1|L2|A|489
8RXH|1|L2|A|490

Current chains

Chain L2

LSUb_rRNA_chain_2

Nearby chains

Chain LA

Putative 60S ribosomal protein L2