IL_8RXH_142
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- CAG*CGUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_142 not in the Motif Atlas
- Geometric match to IL_5TBW_099
- Geometric discrepancy: 0.1536
- The information below is about IL_5TBW_099
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_71241.2
- Basepair signature
- cWW-cWW-tSH-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
8RXH|1|L2|C|1093
8RXH|1|L2|A|1094
8RXH|1|L2|G|1095
*
8RXH|1|L2|C|1113
8RXH|1|L2|G|1114
8RXH|1|L2|U|1115
8RXH|1|L2|A|1116
8RXH|1|L2|G|1117
Current chains
- Chain L2
- LSUb_rRNA_chain_2
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain L8
- 5S ribosomal RNA; 5S rRNA
- Chain LD
- 60S ribosomal protein L11
- Chain LO
- Putative 60S ribosomal protein L5
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