IL_8RXH_173
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- GGUAGUAC*GGAACUC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_173 not in the Motif Atlas
- Homologous match to IL_8C3A_125
- Geometric discrepancy: 0.1309
- The information below is about IL_8C3A_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8RXH|1|L4|G|46
8RXH|1|L4|G|47
8RXH|1|L4|U|48
8RXH|1|L4|A|49
8RXH|1|L4|G|50
8RXH|1|L4|U|51
8RXH|1|L4|A|52
8RXH|1|L4|C|53
*
8RXH|1|L4|G|58
8RXH|1|L4|G|59
8RXH|1|L4|A|60
8RXH|1|L4|A|61
8RXH|1|L4|C|62
8RXH|1|L4|U|63
8RXH|1|L4|C|64
Current chains
- Chain L4
- SR2_chain_4
Nearby chains
- Chain L2
- Large subunit ribosomal RNA; LSU rRNA
- Chain LB
- Putative ribosomal protein L3
- Chain LE
- Putative 60S ribosomal protein L9
- Chain LJ
- Putative 60S ribosomal protein L23
- Chain Lm
- Ubiquitin-60S ribosomal protein L40
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