IL_8RXH_177
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- UUUCUG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- 8RXH|1|L4|U|84, 8RXH|1|L4|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_177 not in the Motif Atlas
- Homologous match to IL_8C3A_127
- Geometric discrepancy: 0.1607
- The information below is about IL_8C3A_127
- Detailed Annotation
- UAA/GAN related
- Broad Annotation
- UAA/GAN related
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
8RXH|1|L4|U|82
8RXH|1|L4|U|83
8RXH|1|L4|U|84
8RXH|1|L4|C|85
8RXH|1|L4|U|86
8RXH|1|L4|G|87
*
8RXH|1|L4|C|112
8RXH|1|L4|G|113
8RXH|1|L4|A|114
8RXH|1|L4|A|115
8RXH|1|L4|G|116
Current chains
- Chain L4
- SR2_chain_4
Nearby chains
- Chain L2
- Large subunit ribosomal RNA; LSU rRNA
- Chain L5
- SR4_chain_5
- Chain LB
- Putative ribosomal protein L3
- Chain LX
- Putative ribosomal protein L24
- Chain Le
- Putative 60S ribosomal subunit protein L31
Coloring options: