IL_8RXH_216
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- UAUCAG*CGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 8RXH|1|S1|U|357, 8RXH|1|S1|U|395
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_216 not in the Motif Atlas
- Homologous match to IL_8C3A_410
- Geometric discrepancy: 0.1167
- The information below is about IL_8C3A_410
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.1
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8RXH|1|S1|U|355
8RXH|1|S1|A|356
8RXH|1|S1|U|357
8RXH|1|S1|C|358
8RXH|1|S1|A|359
8RXH|1|S1|G|360
*
8RXH|1|S1|C|392
8RXH|1|S1|G|393
8RXH|1|S1|U|394
8RXH|1|S1|U|395
8RXH|1|S1|G|396
8RXH|1|S1|A|397
8RXH|1|S1|C|398
8RXH|1|S1|G|399
Current chains
- Chain S1
- SSU_rRNA_chain_S1
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain SK
- 40S ribosomal protein S8
- Chain SP
- Putative 40S ribosomal protein S23
- Chain SU
- Ribosomal protein S17 family protein
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