IL_8RXH_227
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 8RXH|1|S1|A|628, 8RXH|1|S1|U|630
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_227 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.17
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8RXH|1|S1|G|611
8RXH|1|S1|U|612
8RXH|1|S1|G|613
8RXH|1|S1|C|614
8RXH|1|S1|C|615
8RXH|1|S1|A|616
8RXH|1|S1|G|617
*
8RXH|1|S1|C|624
8RXH|1|S1|G|625
8RXH|1|S1|G|626
8RXH|1|S1|U|627
8RXH|1|S1|A|628
8RXH|1|S1|A|629
8RXH|1|S1|U|630
8RXH|1|S1|U|631
8RXH|1|S1|C|632
Current chains
- Chain S1
- SSU_rRNA_chain_S1
Nearby chains
- Chain S2
- Transfer RNA; tRNA
- Chain S5
- mRNA_chain_S5
- Chain SC
- Putative 40S ribosomal protein S3
- Chain SP
- Putative 40S ribosomal protein S23
- Chain Se
- 40S ribosomal protein S30
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