IL_8RXH_229
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_229 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.0932
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
8RXH|1|S1|C|676
8RXH|1|S1|G|677
8RXH|1|S1|U|678
8RXH|1|S1|A|679
8RXH|1|S1|G|680
*
8RXH|1|S1|U|1215
8RXH|1|S1|C|1216
8RXH|1|S1|A|1217
8RXH|1|S1|A|1218
8RXH|1|S1|G|1219
Current chains
- Chain S1
- SSU_rRNA_chain_S1
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain SJ
- Putative 40S ribosomal protein S15A
- Chain SP
- Putative 40S ribosomal protein S23
- Chain ST
- Putative 40S ribosomal protein S13
- Chain SU
- Ribosomal protein S17 family protein
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