IL_8RXH_242
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 8RXH|1|S1|G|1123
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_242 not in the Motif Atlas
- Homologous match to IL_4V88_431
- Geometric discrepancy: 0.1254
- The information below is about IL_4V88_431
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8RXH|1|S1|C|1121
8RXH|1|S1|G|1122
8RXH|1|S1|G|1123
8RXH|1|S1|G|1124
8RXH|1|S1|G|1125
*
8RXH|1|S1|C|1197
8RXH|1|S1|A|1198
8RXH|1|S1|A|1199
8RXH|1|S1|G|1200
Current chains
- Chain S1
- SSU_rRNA_chain_S1
Nearby chains
- Chain Ld
- 60S ribosomal protein L30
- Chain SA
- 40S ribosomal protein S3a
- Chain ST
- Putative 40S ribosomal protein S13
- Chain Sb
- 40S ribosomal protein S26
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