IL_8RXH_260

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

A(PSU)C*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_260 not in the Motif Atlas

Homologous match to IL_8C3A_452

Geometric discrepancy: 0.3519

The information below is about IL_8C3A_452

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8RXH|1|S1|A|1565
8RXH|1|S1|PSU|1566
8RXH|1|S1|C|1567
*
8RXH|1|S1|G|1849
8RXH|1|S1|U|1850
8RXH|1|S1|U|1851

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SN

Putative 40S ribosomal protein S10

Chain SS

Putative ribosomal protein S29

Chain SW

Putative 40S ribosomal protein S15

Chain Sf

Ubiquitin-60S ribosomal protein L40