IL_8RXH_266
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- UGG*UC(OMU)GUGA
- Length
- 10 nucleotides
- Bulged bases
- 8RXH|1|S1|G|1836
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_266 not in the Motif Atlas
- Geometric match to IL_4V88_451
- Geometric discrepancy: 0.2254
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8RXH|1|S1|U|1628
8RXH|1|S1|G|1629
8RXH|1|S1|G|1630
*
8RXH|1|S1|U|1831
8RXH|1|S1|C|1832
8RXH|1|S1|OMU|1833
8RXH|1|S1|G|1834
8RXH|1|S1|U|1835
8RXH|1|S1|G|1836
8RXH|1|S1|A|1837
Current chains
- Chain S1
- SSU_rRNA_chain_S1
Nearby chains
- Chain SC
- Putative 40S ribosomal protein S3
- Chain SM
- Putative ribosomal protein S20
- Chain SN
- Putative 40S ribosomal protein S10
- Chain SS
- Putative ribosomal protein S29
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