IL_8RXH_285

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CGU*AAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_285 not in the Motif Atlas

Geometric match to IL_5Z1I_002

Geometric discrepancy: 0.2339

The information below is about IL_5Z1I_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

8RXH|1|S1|C|2064
8RXH|1|S1|G|2065
8RXH|1|S1|U|2066
*
8RXH|1|S1|A|2157
8RXH|1|S1|A|2158
8RXH|1|S1|A|2159
8RXH|1|S1|G|2160

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain L2

Large subunit ribosomal RNA; LSU rRNA

Chain Ln

60S ribosomal protein L41

Chain S2

Transfer RNA; tRNA

Chain S5

mRNA_chain_S5

Chain SP

Putative 40S ribosomal protein S23

Chain Se

40S ribosomal protein S30