IL_8RXH_303

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GGCGU(A2M)(OMG)*CGAA(A2M)C

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_303 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.09

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8RXH|1|L1|G|1534
8RXH|1|L1|G|1535
8RXH|1|L1|C|1536
8RXH|1|L1|G|1537
8RXH|1|L1|U|1538
8RXH|1|L1|A2M|1539
8RXH|1|L1|OMG|1540
*
8RXH|1|L2|C|600
8RXH|1|L2|G|601
8RXH|1|L2|A|602
8RXH|1|L2|A|603
8RXH|1|L2|A2M|604
8RXH|1|L2|C|605

Current chains

Chain L1

LSUa_rRNA_chain_1

Chain L2

LSUb_rRNA_chain_2

Nearby chains

Chain LC

Putative ribosomal protein L1a

Chain LT

Putative 60S ribosomal protein L17