IL_8RXH_313

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GA*UAC(OMC)

Length

6 nucleotides

Bulged bases

8RXH|1|L2|A|1246

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_313 not in the Motif Atlas

Homologous match to IL_8P9A_322

Geometric discrepancy: 0.0838

The information below is about IL_8P9A_322

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

8RXH|1|L2|G|658
8RXH|1|L2|A|659
*
8RXH|1|L2|U|1245
8RXH|1|L2|A|1246
8RXH|1|L2|C|1247
8RXH|1|L2|OMC|1248

Current chains

Chain L2

LSUb_rRNA_chain_2

Nearby chains

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain LA

Putative 60S ribosomal protein L2

Chain S3

Transfer RNA; tRNA