IL_8T3B_058

3D structure

PDB id

8T3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3B_058 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.1192

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8T3B|1|A1|G|1444
8T3B|1|A1|U|1445
8T3B|1|A1|A|1446
8T3B|1|A1|G|1447
8T3B|1|A1|U|1448
8T3B|1|A1|A|1449
8T3B|1|A1|G|1450
*
8T3B|1|A1|C|2354
8T3B|1|A1|G|2355
8T3B|1|A1|A|2356
8T3B|1|A1|A|2357
8T3B|1|A1|A|2358
8T3B|1|A1|C|2359

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain AC

RPL4A isoform 1

Chain AP

60S ribosomal protein L17-A