IL_8T3B_162
3D structure
- PDB id
- 8T3B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- UAUCAA*UUUCAACG
- Length
- 14 nucleotides
- Bulged bases
- 8T3B|1|B5|U|313, 8T3B|1|B5|C|351
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3B_162 not in the Motif Atlas
- Homologous match to IL_8C3A_410
- Geometric discrepancy: 0.1332
- The information below is about IL_8C3A_410
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.1
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8T3B|1|B5|U|311
8T3B|1|B5|A|312
8T3B|1|B5|U|313
8T3B|1|B5|C|314
8T3B|1|B5|A|315
8T3B|1|B5|A|316
*
8T3B|1|B5|U|348
8T3B|1|B5|U|349
8T3B|1|B5|U|350
8T3B|1|B5|C|351
8T3B|1|B5|A|352
8T3B|1|B5|A|353
8T3B|1|B5|C|354
8T3B|1|B5|G|355
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain BI
- 40S ribosomal protein S8-A
- Chain BL
- 40S ribosomal protein S11-A
- Chain BX
- 40S ribosomal protein S23-A
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