IL_8T3C_095

3D structure

PDB id

8T3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CAUA*UAUAG

Length

9 nucleotides

Bulged bases

8T3C|1|A1|A|2502

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3C_095 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.3864

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8T3C|1|A1|C|2444
8T3C|1|A1|A|2445
8T3C|1|A1|U|2446
8T3C|1|A1|A|2447
*
8T3C|1|A1|U|2499
8T3C|1|A1|A|2500
8T3C|1|A1|U|2501
8T3C|1|A1|A|2502
8T3C|1|A1|G|2503

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AG

60S ribosomal protein L8-A

Chain Ai

60S ribosomal protein L36-A

Chain E

RPL1A isoform 1