IL_8T5H_074

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8T5H|1|B|A|1801, 8T5H|1|B|C|1816, 8T5H|1|B|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5H_074 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0869

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8T5H|1|B|U|1798
8T5H|1|B|G|1799
8T5H|1|B|C|1800
8T5H|1|B|A|1801
8T5H|1|B|A|1802
8T5H|1|B|A|1803
8T5H|1|B|C|1804
*
8T5H|1|B|G|1813
8T5H|1|B|G|1814
8T5H|1|B|A|1815
8T5H|1|B|C|1816
8T5H|1|B|G|1817
8T5H|1|B|U|1818
8T5H|1|B|A|1819
8T5H|1|B|U|1820
8T5H|1|B|A|1821

Current chains

Chain B

23S

Nearby chains

Chain C

50S ribosomal protein L2

Chain v

Small subunit ribosomal RNA; SSU rRNA