IL_8T5H_084

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

8T5H|1|B|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5H_084 not in the Motif Atlas

Homologous match to IL_7A0S_076

Geometric discrepancy: 0.076

The information below is about IL_7A0S_076

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

8T5H|1|B|A|2070
8T5H|1|B|A|2071
*
8T5H|1|B|U|2438
8T5H|1|B|A|2439
8T5H|1|B|C|2440
8T5H|1|B|U|2441

Current chains

Chain B

23S

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain C

50S ribosomal protein L2