IL_8T5H_103

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

8T5H|1|B|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5H_103 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1111

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

8T5H|1|B|C|2636
8T5H|1|B|U|2637
8T5H|1|B|G|2638
8T5H|1|B|A|2639
8T5H|1|B|G|2640
*
8T5H|1|B|C|2774
8T5H|1|B|G|2775
8T5H|1|B|A|2776
8T5H|1|B|G|2777
8T5H|1|B|A|2778
8T5H|1|B|U|2779
8T5H|1|B|G|2780
8T5H|1|B|A|2781
8T5H|1|B|G|2782

Current chains

Chain B

23S

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13