IL_8T5H_140
3D structure
- PDB id
- 8T5H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 8T5H|1|v|A|532, 8T5H|1|v|U|534, 8T5H|1|v|A|535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T5H_140 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1622
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8T5H|1|v|G|515
8T5H|1|v|U|516
8T5H|1|v|G|517
8T5H|1|v|C|518
8T5H|1|v|C|519
8T5H|1|v|A|520
8T5H|1|v|G|521
*
8T5H|1|v|C|528
8T5H|1|v|G|529
8T5H|1|v|G|530
8T5H|1|v|U|531
8T5H|1|v|A|532
8T5H|1|v|A|533
8T5H|1|v|U|534
8T5H|1|v|A|535
8T5H|1|v|C|536
Current chains
- Chain v
- 16S
Nearby chains
- Chain b
- 30S ribosomal protein S3
- Chain c
- 30S ribosomal protein S4
- Chain k
- 30S ribosomal protein S12
- Chain x
- lmRNA
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