IL_8T5H_150

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

8T5H|1|v|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5H_150 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1366

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

8T5H|1|v|U|684
8T5H|1|v|G|685
8T5H|1|v|U|686
8T5H|1|v|A|687
8T5H|1|v|G|688
*
8T5H|1|v|C|699
8T5H|1|v|G|700
8T5H|1|v|U|701
8T5H|1|v|A|702
8T5H|1|v|G|703
8T5H|1|v|A|704
8T5H|1|v|G|705
8T5H|1|v|A|706

Current chains

Chain v

16S

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain j

30S ribosomal protein S11