IL_8UPO_035

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

8UPO|1|D|A|702

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UPO_035 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.0956

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

8UPO|1|D|U|684
8UPO|1|D|G|685
8UPO|1|D|U|686
8UPO|1|D|A|687
8UPO|1|D|G|688
*
8UPO|1|D|C|699
8UPO|1|D|G|700
8UPO|1|D|U|701
8UPO|1|D|A|702
8UPO|1|D|G|703
8UPO|1|D|A|704
8UPO|1|D|G|705
8UPO|1|D|A|706

Current chains

Chain D

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S11

Chain a

Large subunit ribosomal RNA; LSU rRNA