IL_8UPO_064

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AAGAAG*CCACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UPO_064 not in the Motif Atlas

Homologous match to IL_5J7L_063

Geometric discrepancy: 0.0962

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8UPO|1|D|A|1430
8UPO|1|D|A|1431
8UPO|1|D|G|1432
8UPO|1|D|A|1433
8UPO|1|D|A|1434
8UPO|1|D|G|1435
*
8UPO|1|D|C|1466
8UPO|1|D|C|1467
8UPO|1|D|A|1468
8UPO|1|D|C|1469
8UPO|1|D|U|1470

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain y

50S ribosomal protein L19