IL_8UR0_161
3D structure
- PDB id
- 8UR0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUGUAGGAUAGG*CCC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UR0_161 not in the Motif Atlas
- Homologous match to IL_3U4M_001
- Geometric discrepancy: 0.5147
- The information below is about IL_3U4M_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_71625.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 78
Unit IDs
8UR0|1|a|G|2110
8UR0|1|a|U|2111
8UR0|1|a|G|2112
8UR0|1|a|U|2113
8UR0|1|a|A|2114
8UR0|1|a|G|2115
8UR0|1|a|G|2116
8UR0|1|a|A|2117
8UR0|1|a|U|2118
8UR0|1|a|A|2119
8UR0|1|a|G|2120
8UR0|1|a|G|2121
*
8UR0|1|a|C|2177
8UR0|1|a|C|2178
8UR0|1|a|C|2179
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain A
- Transfer RNA; tRNA
Coloring options: