3D structure

PDB id
8UR0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GUGUAGGAUAGG*CCC
Length
15 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UR0_161 not in the Motif Atlas
Homologous match to IL_3U4M_001
Geometric discrepancy: 0.5147
The information below is about IL_3U4M_001
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_71625.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
65

Unit IDs

8UR0|1|a|G|2110
8UR0|1|a|U|2111
8UR0|1|a|G|2112
8UR0|1|a|U|2113
8UR0|1|a|A|2114
8UR0|1|a|G|2115
8UR0|1|a|G|2116
8UR0|1|a|A|2117
8UR0|1|a|U|2118
8UR0|1|a|A|2119
8UR0|1|a|G|2120
8UR0|1|a|G|2121
*
8UR0|1|a|C|2177
8UR0|1|a|C|2178
8UR0|1|a|C|2179

Current chains

Chain a
23S rRNA

Nearby chains

Chain A
Transfer RNA; tRNA

Coloring options:


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