3D structure

PDB id
8URY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 30 nt long spacer, and fMet-tRNA in E-site and P-site of the ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UGAAAUCC*GAACUG
Length
14 nucleotides
Bulged bases
8URY|1|D|U|632
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8URY_030 not in the Motif Atlas
Homologous match to IL_5J7L_030
Geometric discrepancy: 0.0964
The information below is about IL_5J7L_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

8URY|1|D|U|605
8URY|1|D|G|606
8URY|1|D|A|607
8URY|1|D|A|608
8URY|1|D|A|609
8URY|1|D|U|610
8URY|1|D|C|611
8URY|1|D|C|612
*
8URY|1|D|G|628
8URY|1|D|A|629
8URY|1|D|A|630
8URY|1|D|C|631
8URY|1|D|U|632
8URY|1|D|G|633

Current chains

Chain D
16S rRNA

Nearby chains

Chain J
30S ribosomal protein S4
Chain N
30S ribosomal protein S8
Chain U
30S ribosomal protein S16
Chain V
30S ribosomal protein S17

Coloring options:


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