3D structure

PDB id
8URY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 30 nt long spacer, and fMet-tRNA in E-site and P-site of the ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UGUAG*CGUAGAGA
Length
13 nucleotides
Bulged bases
8URY|1|D|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8URY_035 not in the Motif Atlas
Homologous match to IL_5J7L_035
Geometric discrepancy: 0.0956
The information below is about IL_5J7L_035
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_01488.3
Basepair signature
cWW-tSS-tSH-L-R-tHS-L-cWW
Number of instances in this motif group
10

Unit IDs

8URY|1|D|U|684
8URY|1|D|G|685
8URY|1|D|U|686
8URY|1|D|A|687
8URY|1|D|G|688
*
8URY|1|D|C|699
8URY|1|D|G|700
8URY|1|D|U|701
8URY|1|D|A|702
8URY|1|D|G|703
8URY|1|D|A|704
8URY|1|D|G|705
8URY|1|D|A|706

Current chains

Chain D
16S rRNA

Nearby chains

Chain Q
30S ribosomal protein S11
Chain a
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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