IL_8URY_141

3D structure

PDB id

8URY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 30 nt long spacer, and fMet-tRNA in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8URY|1|a|A|1801, 8URY|1|a|C|1816, 8URY|1|a|U|1820

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URY_141 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0827

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8URY|1|a|U|1798
8URY|1|a|G|1799
8URY|1|a|C|1800
8URY|1|a|A|1801
8URY|1|a|A|1802
8URY|1|a|A|1803
8URY|1|a|C|1804
*
8URY|1|a|G|1813
8URY|1|a|G|1814
8URY|1|a|A|1815
8URY|1|a|C|1816
8URY|1|a|G|1817
8URY|1|a|U|1818
8URY|1|a|A|1819
8URY|1|a|U|1820
8URY|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain D

Small subunit ribosomal RNA; SSU rRNA

Chain h

50S ribosomal protein L2