3D structure

PDB id
8URY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 30 nt long spacer, and fMet-tRNA in E-site and P-site of the ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUGAG*CGAGAUGAG
Length
14 nucleotides
Bulged bases
8URY|1|a|G|2780
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8URY_178 not in the Motif Atlas
Homologous match to IL_5J7L_345
Geometric discrepancy: 0.0767
The information below is about IL_5J7L_345
Detailed Annotation
tSH-tHS-tHW
Broad Annotation
tSH-tHS-tHW
Motif group
IL_04638.3
Basepair signature
cWW-tSH-tHW-tHS-cSH-cWW-L
Number of instances in this motif group
5

Unit IDs

8URY|1|a|C|2636
8URY|1|a|U|2637
8URY|1|a|G|2638
8URY|1|a|A|2639
8URY|1|a|G|2640
*
8URY|1|a|C|2774
8URY|1|a|G|2775
8URY|1|a|A|2776
8URY|1|a|G|2777
8URY|1|a|A|2778
8URY|1|a|U|2779
8URY|1|a|G|2780
8URY|1|a|A|2781
8URY|1|a|G|2782

Current chains

Chain a
23S rRNA

Nearby chains

Chain j
50S ribosomal protein L3
Chain s
Large ribosomal subunit protein uL13

Coloring options:


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