3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
UAUCAA*UUUCAACG
Length
14 nucleotides
Bulged bases
8UT0|1|2|U|313, 8UT0|1|2|C|351
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UT0_019 not in the Motif Atlas
Homologous match to IL_8C3A_410
Geometric discrepancy: 0.0893
The information below is about IL_8C3A_410
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.1
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
6

Unit IDs

8UT0|1|2|U|311
8UT0|1|2|A|312
8UT0|1|2|U|313
8UT0|1|2|C|314
8UT0|1|2|A|315
8UT0|1|2|A|316
*
8UT0|1|2|U|348
8UT0|1|2|U|349
8UT0|1|2|U|350
8UT0|1|2|C|351
8UT0|1|2|A|352
8UT0|1|2|A|353
8UT0|1|2|C|354
8UT0|1|2|G|355

Current chains

Chain 2
18S rRNA

Nearby chains

Chain SV
40S ribosomal protein S8-A
Chain SX
40S ribosomal protein S11-A
Chain Sc
40S ribosomal protein S23-A

Coloring options:


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