IL_8UT0_019

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

8UT0|1|2|U|313, 8UT0|1|2|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_019 not in the Motif Atlas

Homologous match to IL_8C3A_410

Geometric discrepancy: 0.0893

The information below is about IL_8C3A_410

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.1

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

8UT0|1|2|U|311
8UT0|1|2|A|312
8UT0|1|2|U|313
8UT0|1|2|C|314
8UT0|1|2|A|315
8UT0|1|2|A|316
*
8UT0|1|2|U|348
8UT0|1|2|U|349
8UT0|1|2|U|350
8UT0|1|2|C|351
8UT0|1|2|A|352
8UT0|1|2|A|353
8UT0|1|2|C|354
8UT0|1|2|G|355

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SV

40S ribosomal protein S8-A

Chain SX

40S ribosomal protein S11-A

Chain Sc

40S ribosomal protein S23-A