IL_8UT0_046

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

8UT0|1|2|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_046 not in the Motif Atlas

Homologous match to IL_8C3A_438

Geometric discrepancy: 0.0946

The information below is about IL_8C3A_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

8UT0|1|2|C|874
8UT0|1|2|G|875
8UT0|1|2|G|876
8UT0|1|2|G|877
8UT0|1|2|G|878
*
8UT0|1|2|C|950
8UT0|1|2|A|951
8UT0|1|2|A|952
8UT0|1|2|G|953

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S1-A

Chain SY

40S ribosomal protein S13

Chain Se

40S ribosomal protein S26-B