IL_8UT0_047

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_047 not in the Motif Atlas

Homologous match to IL_8P9A_421

Geometric discrepancy: 0.0634

The information below is about IL_8P9A_421

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8UT0|1|2|G|885
8UT0|1|2|U|886
8UT0|1|2|A|887
8UT0|1|2|U|888
*
8UT0|1|2|A|924
8UT0|1|2|G|925
8UT0|1|2|A|926
8UT0|1|2|C|927

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S1-A

Chain SZ

40S ribosomal protein S14-B

Chain Se

40S ribosomal protein S26-B