IL_8UT0_140

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

UCUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8UT0|1|A|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_140 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.2309

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8UT0|1|A|U|1218
8UT0|1|A|C|1219
8UT0|1|A|U|1220
8UT0|1|A|A|1221
8UT0|1|A|G|1222
8UT0|1|A|A|1223
8UT0|1|A|C|1224
8UT0|1|A|A|1225
8UT0|1|A|G|1226
*
8UT0|1|A|C|1283
8UT0|1|A|C|1284
8UT0|1|A|G|1285
8UT0|1|A|A|1286
8UT0|1|A|A|1287

Current chains

Chain A

25S rRNA

Nearby chains

Chain LU

60S ribosomal protein L20-A