IL_8UT0_225
3D structure
- PDB id
- 8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- GAAAGCA*UUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UT0_225 not in the Motif Atlas
- Homologous match to IL_8C3A_144
- Geometric discrepancy: 0.1046
- The information below is about IL_8C3A_144
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_45841.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8UT0|1|B|G|21
8UT0|1|B|A|22
8UT0|1|B|A|23
8UT0|1|B|A|24
8UT0|1|B|G|25
8UT0|1|B|C|26
8UT0|1|B|A|27
*
8UT0|1|B|U|53
8UT0|1|B|U|54
8UT0|1|B|A|55
8UT0|1|B|A|56
8UT0|1|B|G|57
8UT0|1|B|C|58
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain LG
- 60S ribosomal protein L5
- Chain LM
- 60S ribosomal protein L11-B
Coloring options: