IL_8UU8_140
3D structure
- PDB id
- 8UU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 8UU8|1|a|A|540, 8UU8|1|a|U|542, 8UU8|1|a|A|543
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UU8_140 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1435
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8UU8|1|a|G|523
8UU8|1|a|U|524
8UU8|1|a|G|525
8UU8|1|a|C|526
8UU8|1|a|C|527
8UU8|1|a|A|528
8UU8|1|a|G|529
*
8UU8|1|a|C|536
8UU8|1|a|G|537
8UU8|1|a|G|538
8UU8|1|a|U|539
8UU8|1|a|A|540
8UU8|1|a|A|541
8UU8|1|a|U|542
8UU8|1|a|A|543
8UU8|1|a|C|544
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain c
- Small ribosomal subunit protein uS3
- Chain d
- Small ribosomal subunit protein uS4
- Chain l
- Small ribosomal subunit protein uS12
Coloring options: