IL_8UU8_163

3D structure

PDB id

8UU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGCAU*AUGC

Length

10 nucleotides

Bulged bases

8UU8|1|a|C|1063

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU8_163 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.3339

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

8UU8|1|a|G|1060
8UU8|1|a|U|1061
8UU8|1|a|G|1062
8UU8|1|a|C|1063
8UU8|1|a|A|1064
8UU8|1|a|U|1065
*
8UU8|1|a|A|1211
8UU8|1|a|U|1212
8UU8|1|a|G|1213
8UU8|1|a|C|1214

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain c

Small ribosomal subunit protein uS3