3D structure

PDB id
8V83 (explore in PDB, NAKB, or RNA 3D Hub)
Description
60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.53 Å

Loop

Sequence
GAAUGUAG*UAUUAUAGC
Length
17 nucleotides
Bulged bases
8V83|1|1|U|534, 8V83|1|1|U|558
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8V83_020 not in the Motif Atlas
Geometric match to IL_5TBW_020
Geometric discrepancy: 0.0972
The information below is about IL_5TBW_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_07703.1
Basepair signature
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

8V83|1|1|G|531
8V83|1|1|A|532
8V83|1|1|A|533
8V83|1|1|U|534
8V83|1|1|G|535
8V83|1|1|U|536
8V83|1|1|A|537
8V83|1|1|G|538
*
8V83|1|1|U|553
8V83|1|1|A|554
8V83|1|1|U|555
8V83|1|1|U|556
8V83|1|1|A|557
8V83|1|1|U|558
8V83|1|1|A|559
8V83|1|1|G|560
8V83|1|1|C|561

Current chains

Chain 1
Saccharomyces cerevisiae S288C 25S ribosomal RNA

Nearby chains

Chain M
60S ribosomal protein L14-A
Chain S
Large ribosomal subunit protein eL20A

Coloring options:


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