IL_8V83_091
3D structure
- PDB id
- 8V83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.53 Å
Loop
- Sequence
- UG*UGAA
- Length
- 6 nucleotides
- Bulged bases
- 8V83|1|6|G|52, 8V83|1|6|A|53
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V83_091 not in the Motif Atlas
- Geometric match to IL_4V88_392
- Geometric discrepancy: 0.2272
- The information below is about IL_4V88_392
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_82107.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 34
Unit IDs
8V83|1|6|U|26
8V83|1|6|G|27
*
8V83|1|6|U|51
8V83|1|6|G|52
8V83|1|6|A|53
8V83|1|6|A|54
Current chains
- Chain 6
- Saccharomyces cerevisiae ITS-2
Nearby chains
- Chain D
- ATP-dependent RNA helicase HAS1
- Chain G
- Large ribosomal subunit protein eL8A
- Chain K
- Proteasome-interacting protein CIC1
- Chain o
- Ribosome biogenesis protein 15
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