IL_8V9K_105

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9K_105 not in the Motif Atlas

Geometric match to IL_4Y1M_005

Geometric discrepancy: 0.1399

The information below is about IL_4Y1M_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

8V9K|1|A|C|2685
8V9K|1|A|U|2686
8V9K|1|A|U|2687
*
8V9K|1|A|A|2711
8V9K|1|A|U|2712
8V9K|1|A|G|2713

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 9

50S Ribosomal Protein L37

Chain O

Large ribosomal subunit protein uL16

Chain Y

50S ribosomal protein L27

Chain z

Ribosome hibernation factor Balon (Rv2629)