IL_8VFT_076
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 8VFT|1|5|U|1930, 8VFT|1|5|C|1931, 8VFT|1|5|G|2055, 8VFT|1|5|A|2057
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VFT_076 not in the Motif Atlas
- Homologous match to IL_8C3A_054
- Geometric discrepancy: 0.2487
- The information below is about IL_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8VFT|1|5|C|1926
8VFT|1|5|U|1927
8VFT|1|5|C|1928
8VFT|1|5|A|1929
8VFT|1|5|U|1930
8VFT|1|5|C|1931
8VFT|1|5|A|1932
8VFT|1|5|G|1933
*
8VFT|1|5|C|2053
8VFT|1|5|U|2054
8VFT|1|5|G|2055
8VFT|1|5|G|2056
8VFT|1|5|A|2057
8VFT|1|5|G|2058
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain H
- uL6
- Chain M
- eL14
- Chain O
- uL13
- Chain S
- eL20
- Chain m
- eL40
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