IL_8VFT_080

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

8VFT|1|5|G|1975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_080 not in the Motif Atlas

Homologous match to IL_8P9A_283

Geometric discrepancy: 0.5851

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8VFT|1|5|G|1973
8VFT|1|5|U|1974
8VFT|1|5|G|1975
8VFT|1|5|G|1976
8VFT|1|5|C|1977
*
8VFT|1|5|G|1989
8VFT|1|5|A|1990
8VFT|1|5|A|1991
8VFT|1|5|U|1992
8VFT|1|5|C|1993

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

uL16

Chain s

uL10

Chain t

uL11