IL_8VFT_086

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_086 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.1057

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8VFT|1|5|G|2358
8VFT|1|5|U|2359
8VFT|1|5|A|2360
8VFT|1|5|G|2361
8VFT|1|5|U|2362
8VFT|1|5|A2M|2363
8VFT|1|5|OMG|2364
*
8VFT|1|5|C|3858
8VFT|1|5|G|3859
8VFT|1|5|A|3860
8VFT|1|5|A|3861
8VFT|1|5|A|3862
8VFT|1|5|C|3863

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain C

uL4

Chain P

uL22