IL_8VFT_146

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUAU(OMG)*CGAAG

Length

11 nucleotides

Bulged bases

8VFT|1|5|U|4634, 8VFT|1|5|U|4636

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_146 not in the Motif Atlas

Homologous match to IL_8P9A_346

Geometric discrepancy: 0.2592

The information below is about IL_8P9A_346

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_98200.1

Basepair signature

cWW-L-R-tHW-L-cWW

Number of instances in this motif group

3

Unit IDs

8VFT|1|5|U|4632
8VFT|1|5|G|4633
8VFT|1|5|U|4634
8VFT|1|5|A|4635
8VFT|1|5|U|4636
8VFT|1|5|OMG|4637
*
8VFT|1|5|C|4662
8VFT|1|5|G|4663
8VFT|1|5|A|4664
8VFT|1|5|A|4665
8VFT|1|5|G|4666

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain W

eL24

Chain d

eL31