IL_8VFT_183

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

8VFT|1|9|U|305, 8VFT|1|9|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_183 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3235

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

8VFT|1|9|C|216
8VFT|1|9|A|217
8VFT|1|9|U|218
8VFT|1|9|U|219
*
8VFT|1|9|A|302
8VFT|1|9|C|303
8VFT|1|9|C|304
8VFT|1|9|U|305
8VFT|1|9|C|306
8VFT|1|9|G|307
8VFT|1|9|G|308
8VFT|1|9|G|309

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

eS4

Chain II

eS8