IL_8VFT_186
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 8VFT|1|9|U|361, 8VFT|1|9|C|399, 8VFT|1|9|C|400
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VFT_186 not in the Motif Atlas
- Homologous match to IL_8C3A_410
- Geometric discrepancy: 0.123
- The information below is about IL_8C3A_410
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.1
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8VFT|1|9|U|359
8VFT|1|9|A|360
8VFT|1|9|U|361
8VFT|1|9|C|362
8VFT|1|9|A|363
8VFT|1|9|A|364
*
8VFT|1|9|U|396
8VFT|1|9|G|397
8VFT|1|9|A|398
8VFT|1|9|C|399
8VFT|1|9|C|400
8VFT|1|9|A|401
8VFT|1|9|C|402
8VFT|1|9|G|403
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain II
- eS8
- Chain LL
- uS17
- Chain XX
- uS12
Coloring options: