IL_8VFT_197

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

8VFT|1|9|A|628, 8VFT|1|9|U|630, 8VFT|1|9|U|631

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_197 not in the Motif Atlas

Homologous match to IL_8C3A_425

Geometric discrepancy: 0.1655

The information below is about IL_8C3A_425

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.2

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8VFT|1|9|G|611
8VFT|1|9|PSU|612
8VFT|1|9|G|613
8VFT|1|9|C|614
8VFT|1|9|C|615
8VFT|1|9|A|616
8VFT|1|9|G|617
*
8VFT|1|9|C|624
8VFT|1|9|G|625
8VFT|1|9|G|626
8VFT|1|9|U|627
8VFT|1|9|A|628
8VFT|1|9|A|629
8VFT|1|9|U|630
8VFT|1|9|U|631
8VFT|1|9|C|632

Current chains

Chain 9

18S rRNA

Nearby chains

Chain DD

uS3

Chain XX

uS12

Chain ee

eS30

Chain v

eEF2