IL_8VFT_212

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

8VFT|1|9|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_212 not in the Motif Atlas

Homologous match to IL_8C3A_438

Geometric discrepancy: 0.1589

The information below is about IL_8C3A_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

8VFT|1|9|C|931
8VFT|1|9|G|932
8VFT|1|9|G|933
8VFT|1|9|G|934
8VFT|1|9|G|935
*
8VFT|1|9|C|1007
8VFT|1|9|A|1008
8VFT|1|9|A|1009
8VFT|1|9|G|1010

Current chains

Chain 9

18S rRNA

Nearby chains

Chain BB

eS1

Chain NN

uS15

Chain aa

eS26