IL_8VFT_223

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

8VFT|1|9|C|1215, 8VFT|1|9|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_223 not in the Motif Atlas

Homologous match to IL_8C3A_449

Geometric discrepancy: 0.1796

The information below is about IL_8C3A_449

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.10

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

16

Unit IDs

8VFT|1|9|A|1214
8VFT|1|9|C|1215
8VFT|1|9|C|1216
8VFT|1|9|A|1217
*
8VFT|1|9|U|1681
8VFT|1|9|C|1682
8VFT|1|9|C|1683
8VFT|1|9|C|1684
8VFT|1|9|U|1685

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain FF

uS7

Chain QQ

uS9

Chain aa

eS26

Chain cc

eS28